PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_05650-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 89aa    MW: 9829.79 Da    PI: 7.5209
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_05650-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-091660344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++ + +l+ da + +G g   +W +++r mg ++t+ +++ ++
  TRIUR3_05650-P1 16 EWSKKDNKLFEDALAYYGEGtpdRWLKVSRAMGGTKTADEVRRHY 60
                     7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.25E-111366IPR009057Homeodomain-like
SMARTSM007174.1E-51366IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-41662IPR009057Homeodomain-like
PfamPF002491.1E-61660IPR001005SANT/Myb domain
CDDcd001675.54E-51660No hitNo description
PROSITE profilePS500905.9931764IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSGSSSSSR GGANVEWSKK DNKLFEDALA YYGEGTPDRW LKVSRAMGGT KTADEVRRHY  60
EILDGDIKLI DSGRVPFPNY NTQGQGAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-24784277RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739371e-126AK373937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3048G15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.17e-39hypothetical protein SORBIDRAFT_03g030330
SwissprotQ58FS33e-25RAD_ANTMA; Transcription factor RADIALIS
TrEMBLM7YIG67e-61M7YIG6_TRIUA; Uncharacterized protein
STRINGMLOC_75951.12e-42(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-24RAD-like 1